line 265001. Use of uninitialized v...WitrynaLoftee VEP plugin creates incorrectly formatted VCFs #93 opened Feb 9, 2024 by pd3 Error: lib/Bio/DB/BigFile.c: loadable library and perl binaries are mismatched (got …
Failed to instantiate plugin LoF · Issue #24 · konradjk/loftee
WitrynaLoftee VEP plugin creates incorrectly formatted VCFs #93 opened on Feb 9 by pd3 Error: lib/Bio/DB/BigFile.c: loadable library and perl binaries are mismatched (got handshake key 0xed00080, needed 0xeb00080) #90 opened on Jan 27 by sahwa No splice site and ancestral allele annotations #87 opened on Mar 7, 2024 by Filago4WitrynaI analysed some variants using the LOFTEE plugin, and have also extracted the LOFTEE annotations for the same variants from the Gnomad API, and I found discrepancies in the calls between the LOFTEE plugin and Gnomad on some variants, to the extant that some variants are classified by Gnomad as high confidence LOF, …jay feather drawing
Unable to use Loftee plugin from grch38 branch #58 - GitHub
Witryna19 sie 2024 · Installed the loftee and other plugins at new path and passed that path to vep via --dir_plugins ... still no success !!! I hardcoded the path to the required file in loftee_splice_utils.pl ... still … WitrynaUse LOFTEE Check this box if you want to use LOFTEE. Requires the plugin file in the plugin directory. Path to human_ancestor.fa.gz You can find a download link for this file following the LOFTEE link above. Path to phylocsf.sql You can find a download link for this file following the LOFTEE link above. Witryna29 lut 2024 · Firstly, run the " export " line in order to add the relevant version of LOFTEE to the Perl library variable (note: you need to choose GRCh37 or GRCh37 here because, due to how the plugin's code is written, the code for processing GRCh37 or GRCh38 data is found at different locations):jay feather exp 19h