WebAuthor(s): Matzke, Nicholas Joseph Abstract: Historical biogeography has been characterized by a large diversity of methods and unresolved debates about which processes, such as dispersal or vicariance, are most important for explaining distributions. A new R package, BioGeoBEARS, implements many models in a common likelihood … WebJul 29, 2015 · Founder-event speciation in BioGeoBEARS package dramatically improves likelihoods and alters parameter inference in Dispersal-Extinction-Cladogenesis (DEC) analyses. Frontiers of Biogeography, 4(suppl. 1): 210, December 2012.
Lab 12: Probabilistic Models of Geographic Range …
WebOct 15, 2024 · October 15, 2024 Software Open Access . nmatzke/BioGeoBEARS: BioGeoBEARS: BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts. Nicholas J. Matzke WebBioGeoBEARS is an R package, authored by Nicholas J. Matzke, that is designed to perform inference of biogeographic history on phylogenies, and also model testing and … Manual modification of states_list (list of geographic ranges, a.k.a. the list of … Eliminating those and obvious reviews etc., I get about 155 hits; Matzke 2014 has … sims 4 alpha male hair cc
nmatzke/BioGeoBEARS - Github
WebAug 14, 2014 · BioGeoBEARS's DEC model performed well in validation tests against LAGRANGE on the example Psychotria data set for constraints M0–M3 . In almost all cases, BioGeoBEARS replicated the log-likelihoods and parameter estimates returned by LAGRANGE for the same input data. This is strong evidence that the fundamental logic … WebJan 2, 2014 · BioGeoBEARS allows probabilistic inference of both historical biogeography (ancestral geographic ranges on a phylogeny) as well as comparison of different models … WebRASP (Reconstruct Ancestral State in Phylogenies) is a tool for inferring ancestral state using S-DIVA (Statistical dispersal-vicariance analysis), Lagrange (DEC), Bayes-Lagrange (S-DEC), BayArea, BBM (Bayesian Binary MCMC) method, Bayestraits and BioGeoBEARS packages. New RASP v 4 for Windows and Mac OS X has been released! Please don't … sims 4 alpha male hair folder